samsifter.tools package
=======================

.. automodule:: samsifter.tools
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bam_2_sam module
----------------

.. automodule:: samsifter.tools.bam_2_sam
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calculate_pmds module
---------------------

.. automodule:: samsifter.tools.calculate_pmds
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compress module
---------------

.. automodule:: samsifter.tools.compress
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count_taxon_reads module
------------------------

.. automodule:: samsifter.tools.count_taxon_reads
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decompress module
-----------------

.. automodule:: samsifter.tools.decompress
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filter_read_conservation module
-------------------------------

.. automodule:: samsifter.tools.filter_read_conservation
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filter_read_identity module
---------------------------

.. automodule:: samsifter.tools.filter_read_identity
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filter_read_list module
-----------------------

.. automodule:: samsifter.tools.filter_read_list
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filter_read_pmds module
-----------------------

.. automodule:: samsifter.tools.filter_read_pmds
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filter_ref_coverage module
--------------------------

.. automodule:: samsifter.tools.filter_ref_coverage
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filter_ref_identity module
--------------------------

.. automodule:: samsifter.tools.filter_ref_identity
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filter_ref_list module
----------------------

.. automodule:: samsifter.tools.filter_ref_list
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filter_ref_pmds module
----------------------

.. automodule:: samsifter.tools.filter_ref_pmds
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filter_taxon_list module
------------------------

.. automodule:: samsifter.tools.filter_taxon_list
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filter_taxon_pmds module
------------------------

.. automodule:: samsifter.tools.filter_taxon_pmds
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remove_duplicates module
------------------------

.. automodule:: samsifter.tools.remove_duplicates
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sam_2_bam module
----------------

.. automodule:: samsifter.tools.sam_2_bam
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sort_by_coordinates module
--------------------------

.. automodule:: samsifter.tools.sort_by_coordinates
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sort_by_names module
--------------------

.. automodule:: samsifter.tools.sort_by_names
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